FRETBursts 0.7.1+0.gc51b
  • Tutorial
  • Reference Manual
  • Site
      • Introducing FRETBursts
      • Getting started
        • Getting started for the absolute python beginner
          • Installing FRETBursts
          • Running FRETBursts tutorial notebook
        • FRETBursts Installation
          • Installing latest stable version
          • Alternative methods: using PIP
          • Install FRETBursts in a stand-alone environment
          • Install latest development version
        • Running FRETBursts
          • Why a notebook-based workflow
        • FRETBursts Dependencies
      • What's New?
        • Version 0.7.1
        • Version 0.7 (Jul. 2018)
        • Version 0.6.5 (Aug. 2017)
        • Version 0.6.4 (Jul. 2017)
        • Version 0.6.3 (Apr. 2017)
        • Version 0.6.2 (Apr. 2017)
        • Version 0.6.1 (Apr. 2017)
        • Version 0.6 (Jan. 2017)
          • Backward-incompatible changes
            • Effect on burst search
            • Details of auto-threshold changes
            • Background attributes
            • Compatibility layer
            • Details of changed attributes
        • Version 0.5.9 (Sep. 2016)
        • Version 0.5.7 (Sep. 2016)
          • Data Class
          • Plot functions
          • Burst selection
          • Burst Weights
          • Installation via conda-forge
        • Version 0.5.6
      • μs-ALEX Tutorial
      • List of Jupyter Notebooks
      • Reference manual
        • Loader functions
          • List of loader functions
          • Load data manually
        • The “Data()” class
          • “Data()” class: description and attributes
          • Summary information
          • Analysis methods
          • Burst corrections
            • Correction factors
            • Correction methods
          • Burst selection methods
          • Fitting methods
          • Timestamp access methods
        • Photon selections
        • Background estimation
          • background.py
          • Low-level background fit functions
        • Burst selection
          • Selection functions
        • Fit framework
          • MultiFitter reference documentation
            • The MultiFitter class
            • Model factory functions
            • Utility functions
          • Overview
          • Fitting E or S histograms
          • Lmfit introduction
          • Legacy Fit functions
            • Gaussian fitting
            • Exponential fitting
        • Direct FRET fitting
        • Plotting Data
          • Timetrace and ratetrace plots
          • 1D Histograms
            • Bursts: ratiometric quantities
            • Bursts: tail distributions
            • Others
          • ALEX plots
          • Scatter plots
        • Burst Search in FRETBursts
          • Defining the rate estimator
          • Conventions in burst search
          • The Core Algorithm
          • Burst Fusion
          • Low-level burst search functions
        • Photon rates functions
        • FRETBursts plugins
        • Why an HDF5-based smFRET file format
          • What is HDF5?
          • The HDF5 ecosystem
          • Why HDF5 and smFRET?
          • HDF5 in FRETBursts
            • HDF5-based smFRET file format
              • Read and write HDF5 smFRET files
        • FRET Correction Formulas
        • Description of the files
          • burstlib.py
          • loader.py
          • select_bursts.py
          • burst_plot.py
          • background.py
          • phtools (folder)
          • dataload (folder)
          • fit (folder)
        • FRETBursts Cython extensions
      • FRETBursts Paper
      • Burst Search Algorithm
        • Defining the rate estimator
        • Conventions in burst search
        • The Core Algorithm
        • Burst Fusion
        • Low-level burst search functions
      • BVA
      • 2CDE
      • Exporting burst data
      • Report an issue
  • Page
      • Getting started

Getting started¶

  • Getting started for the absolute python beginner
    • Installing FRETBursts
    • Running FRETBursts tutorial notebook
  • FRETBursts Installation
    • Installing latest stable version
    • Alternative methods: using PIP
    • Install FRETBursts in a stand-alone environment
    • Install latest development version
  • Running FRETBursts
    • Why a notebook-based workflow
  • FRETBursts Dependencies

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