FRETBursts 0.6.5+17.gce1
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    FRETBursts Reference Manual¶

    Contents:

    • Loader functions
      • List of loader functions
      • Load data manually
    • The “Data()” class
      • “Data()” class: description and attributes
      • Summary information
      • Analysis methods
      • Burst corrections
        • Correction factors
        • Correction methods
      • Burst selection methods
      • Fitting methods
      • Data access methods
    • Photon selections
    • Background estimation
      • background.py
      • Low-level background fit functions
    • Burst selection
      • Selection functions
    • Fit framework
      • MultiFitter reference documentation
        • The MultiFitter class
        • Model factory functions
        • Utility functions
      • Overview
      • Fitting E or S histograms
      • Lmfit introduction
      • Legacy Fit functions
        • Gaussian fitting
        • Exponential fitting
    • Direct FRET fitting
    • Plotting Data
      • Timetrace and ratetrace plots
      • 1D Histograms
        • Bursts: ratiometric quantities
        • Bursts: tail distributions
        • Others
      • ALEX plots
      • Scatter plots
    • Burst Search in FRETBursts
      • Defining the rate estimator
      • Conventions in burst search
      • The Core Algorithm
      • Burst Fusion
      • Low-level burst search functions
    • Photon rates functions
    • FRETBursts plugins
    • Why an HDF5-based smFRET file format
      • What is HDF5?
      • The HDF5 ecosystem
      • Why HDF5 and smFRET?
      • HDF5 in FRETBursts
        • HDF5-based smFRET file format
    • FRET Correction Formulas
    • Description of the files
      • burstlib.py
      • loader.py
      • select_bursts.py
      • burst_plot.py
      • background.py
      • phtools (folder)
      • dataload (folder)
      • fit (folder)
    • FRETBursts Cython extensions

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    © Copyright 2013-2017, The Regents of the University of California, Antonino Ingargiola and contributors..
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