FRETBursts
0.6.5+17.gce1
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FRETBursts Reference Manual
FRETBursts Reference Manual
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Contents:
Loader functions
List of loader functions
Load data manually
The “Data()” class
“Data()” class: description and attributes
Summary information
Analysis methods
Burst corrections
Correction factors
Correction methods
Burst selection methods
Fitting methods
Data access methods
Photon selections
Background estimation
background.py
Low-level background fit functions
Burst selection
Selection functions
Fit framework
MultiFitter reference documentation
The MultiFitter class
Model factory functions
Utility functions
Overview
Fitting E or S histograms
Lmfit introduction
Legacy Fit functions
Gaussian fitting
Exponential fitting
Direct FRET fitting
Plotting Data
Timetrace and ratetrace plots
1D Histograms
Bursts: ratiometric quantities
Bursts: tail distributions
Others
ALEX plots
Scatter plots
Burst Search in FRETBursts
Defining the rate estimator
Conventions in burst search
The Core Algorithm
Burst Fusion
Low-level burst search functions
Photon rates functions
FRETBursts plugins
Why an HDF5-based smFRET file format
What is HDF5?
The HDF5 ecosystem
Why HDF5 and smFRET?
HDF5 in FRETBursts
HDF5-based smFRET file format
FRET Correction Formulas
Description of the files
burstlib.py
loader.py
select_bursts.py
burst_plot.py
background.py
phtools
(folder)
dataload
(folder)
fit
(folder)
FRETBursts Cython extensions